Koch, M. D., C. Fei, N. S. Wingreen, J. W. Shaevitz, and Z. Gitai. (2021) 2021. “Competitive Binding of Independent Extension and Retraction Motors Explains the Quantitative Dynamics of Type IV Pili”. Proc Natl Acad Sci U S A 118.

Weiner, B. G., A. G. T. Pyo, Y. Meir, and N. S. Wingreen. (2021) 2021. “Motif-Pattern Dependence of Biomolecular Phase Separation Driven by Specific Interactions”. PLoS Comput Biol 17: e1009748.

Narla, A. V., D. B. Borenstein, and N. S. Wingreen. (2021) 2021. “A Biophysical Limit for Quorum Sensing in Biofilms”. Proc Natl Acad Sci U S A 118.

Miangolarra, A. M., S. H. Li, J. F. Joanny, N. S. Wingreen, and M. Castellana. (2021) 2021. “Steric Interactions and Out-of-Equilibrium Processes Control the Internal Organization of Bacteria”. Proc Natl Acad Sci U S A 118.

Emberly, Eldon, and Ned Wingreen. (2006) 2006. “Hourglass Model for a Protein-Based Circadian Oscillator.”. Phys Rev Lett 96 (3): 038303. doi:10.1103/PhysRevLett.96.038303.

Keymer, Juan, Robert Endres, Monica Skoge, Yigal Meir, and Ned Wingreen. (2006) 2006. “Chemosensing in Escherichia Coli: Two Regimes of Two-State Receptors.”. Proc Natl Acad Sci U S A 103 (6): 1786-91. doi:10.1073/pnas.0507438103.

Kulkarni, Rahul, Kerwyn Casey Huang, Morten Kloster, and Ned Wingreen. (2004) 2004. “Pattern Formation Within Escherichia Coli: Diffusion, Membrane Attachment, and Self-Interaction of MinD Molecules.”. Phys Rev Lett 93 (22): 228103. doi:10.1103/PhysRevLett.93.228103.

Lenz, Derrick, Kenny Mok, Brendan Lilley, Rahul Kulkarni, Ned Wingreen, and Bonnie Bassler. (2004) 2004. “The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio Harveyi and Vibrio Cholerae.”. Cell 118 (1): 69-82. doi:10.1016/j.cell.2004.06.009.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, and Ned Wingreen. (2006) 2006. “A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles.”. PLoS Comput Biol 2 (11): e151. doi:10.1371/journal.pcbi.0020151.

Ureta, Alejandro, Robert Endres, Ned Wingreen, and Thomas Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment.”. J Bacteriol 189 (2): 446-54. doi:10.1128/JB.01103-06.

Wingreen, Ned, and David Botstein. (2006) 2006. “Back to the Future: Education for Systems-Level Biologists.”. Nat Rev Mol Cell Biol 7 (11): 829-32. doi:10.1038/nrm2023.

Wingreen, Ned, and Simon Levin. (2006) 2006. “Cooperation Among Microorganisms.”. PLoS Biol 4 (9): e299. doi:10.1371/journal.pbio.0040299.

Endres, Robert, and Ned Wingreen. (2006) 2006. “Precise Adaptation in Bacterial Chemotaxis through ‘assistance neighborhoods’.”. Proc Natl Acad Sci U S A 103 (35): 13040-4. doi:10.1073/pnas.0603101103.

Skoge, Monica, Robert Endres, and Ned Wingreen. (2006) 2006. “Receptor-Receptor Coupling in Bacterial Chemotaxis: Evidence for Strongly Coupled Clusters.”. Biophys J 90 (12): 4317-26. doi:10.1529/biophysj.105.079905.

Mukhopadhyay, Ranjan, Kerwyn Casey Huang, and Ned Wingreen. (2008) 2008. “Lipid Localization in Bacterial Cells through Curvature-Mediated Microphase Separation.”. Biophys J 95 (3): 1034-49. doi:10.1529/biophysj.107.126920.

Hansen, Clinton, Robert Endres, and Ned Wingreen. (2008) 2008. “Chemotaxis in Escherichia Coli: A Molecular Model for Robust Precise Adaptation.”. PLoS Comput Biol 4 (1): e1. doi:10.1371/journal.pcbi.0040001.

Endres, Robert, Joseph Falke, and Ned Wingreen. (2007) 2007. “Chemotaxis Receptor Complexes: From Signaling to Assembly.”. PLoS Comput Biol 3 (7): e150. doi:10.1371/journal.pcbi.0030150.

Endres, Robert, and Ned Wingreen. (2008) 2008. “Accuracy of Direct Gradient Sensing by Single Cells.”. Proc Natl Acad Sci U S A 105 (41): 15749-54. doi:10.1073/pnas.0804688105.

Endres, Robert, Olga Oleksiuk, Clinton Hansen, Yigal Meir, Victor Sourjik, and Ned Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211. doi:10.1038/msb.2008.49.

Mora, Thierry, Howard Yu, Yoshiyuki Sowa, and Ned Wingreen. (2009) 2009. “Steps in the Bacterial Flagellar Motor.”. PLoS Comput Biol 5 (10): e1000540. doi:10.1371/journal.pcbi.1000540.

Greenfield, Derek, Ann McEvoy, Hari Shroff, Gavin Crooks, Ned Wingreen, Eric Betzig, and Jan Liphardt. (2009) 2009. “Self-Organization of the Escherichia Coli Chemotaxis Network Imaged With Super-Resolution Light Microscopy.”. PLoS Biol 7 (6): e1000137. doi:10.1371/journal.pbio.1000137.

Endres, Robert, and Ned Wingreen. (2009) 2009. “Accuracy of Direct Gradient Sensing by Cell-Surface Receptors.”. Prog Biophys Mol Biol 100 (1-3): 33-9. doi:10.1016/j.pbiomolbio.2009.06.002.

Wang, Hui, Ned Wingreen, and Ranjan Mukhopadhyay. (2008) 2008. “Self-Organized Periodicity of Protein Clusters in Growing Bacteria.”. Phys Rev Lett 101 (21): 218101. doi:10.1103/PhysRevLett.101.218101.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, Bingni Wen, Zemer Gitai, and Ned Wingreen. (2008) 2008. “Cell Shape and Cell-Wall Organization in Gram-Negative Bacteria.”. Proc Natl Acad Sci U S A 105 (49): 19282-7. doi:10.1073/pnas.0805309105.

Goyal, Sidhartha, Jie Yuan, Thomas Chen, Joshua Rabinowitz, and Ned Wingreen. (2010) 2010. “Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.”. PLoS Comput Biol 6 (6): e1000802. doi:10.1371/journal.pcbi.1000802.

Mora, Thierry, Howard Yu, and Ned Wingreen. (2009) 2009. “Modeling Torque Versus Speed, Shot Noise, and Rotational Diffusion of the Bacterial Flagellar Motor.”. Phys Rev Lett 103 (24): 248102. doi:10.1103/PhysRevLett.103.248102.

Mukhopadhyay, Ranjan, and Ned Wingreen. (2009) 2009. “Curvature and Shape Determination of Growing Bacteria.”. Phys Rev E Stat Nonlin Soft Matter Phys 80 (6 Pt 1): 062901. doi:10.1103/PhysRevE.80.062901.

Kidd, Philip, and Ned Wingreen. (2010) 2010. “Modeling the Role of Covalent Enzyme Modification in Escherichia Coli Nitrogen Metabolism.”. Phys Biol 7 (1): 016006. doi:10.1088/1478-3975/55/1/016006.

Endres, Robert, and Ned Wingreen. (2009) 2009. “Maximum Likelihood and the Single Receptor.”. Phys Rev Lett 103 (15): 158101. doi:10.1103/PhysRevLett.103.158101.

Daly, Kristopher, Kerwyn Casey Huang, Ned Wingreen, and Ranjan Mukhopadhyay. (2011) 2011. “Mechanics of Membrane Bulging During Cell-Wall Disruption in Gram-Negative Bacteria.”. Phys Rev E Stat Nonlin Soft Matter Phys 83 (4 Pt 1): 041922. doi:10.1103/PhysRevE.83.041922.

Meir, Yigal, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, and Ned Wingreen. (2010) 2010. “Precision and Kinetics of Adaptation in Bacterial Chemotaxis.”. Biophys J 99 (9): 2766-74. doi:10.1016/j.bpj.2010.08.051.

Mora, Thierry, and Ned Wingreen. (2010) 2010. “Limits of Sensing Temporal Concentration Changes by Single Cells.”. Phys Rev Lett 104 (24): 248101. doi:10.1103/PhysRevLett.104.248101.

Hansen, Clinton, Victor Sourjik, and Ned Wingreen. (2010) 2010. “A Dynamic-Signaling-Team Model for Chemotaxis Receptors in Escherichia Coli.”. Proc Natl Acad Sci U S A 107 (40): 17170-5. doi:10.1073/pnas.1005017107.

Cooper, Robert, Ned Wingreen, and Edward Cox. 2012. “An Excitable Cortex and Memory Model Successfully Predicts New Pseudopod Dynamics.”. PLoS One 7 (3): e33528. doi:10.1371/journal.pone.0033528.

Swanson, Douglas, and Ned Wingreen. (2011) 2011. “Active Biopolymers Confer Fast Reorganization Kinetics.”. Phys Rev Lett 107 (21): 218103. doi:10.1103/PhysRevLett.107.218103.

Sourjik, Victor, and Ned Wingreen. (2012) 2012. “Responding to Chemical Gradients: Bacterial Chemotaxis.”. Curr Opin Cell Biol 24 (2): 262-8. doi:10.1016/j.ceb.2011.11.008.

Skoge, Monica, Yigal Meir, and Ned Wingreen. (2011) 2011. “Dynamics of Cooperativity in Chemical Sensing Among Cell-Surface Receptors.”. Phys Rev Lett 107 (17): 178101. doi:10.1103/PhysRevLett.107.178101.

Teeffelen, Sven, Siyuan Wang, Leon Furchtgott, Kerwyn Casey Huang, Ned Wingreen, Joshua Shaevitz, and Zemer Gitai. (2011) 2011. “The Bacterial Actin MreB Rotates, and Rotation Depends on Cell-Wall Assembly.”. Proc Natl Acad Sci U S A 108 (38): 15822-7. doi:10.1073/pnas.1108999108.

McIsaac, Scott, Kerwyn Casey Huang, Anirvan Sengupta, and Ned Wingreen. (2011) 2011. “Does the Potential for Chaos Constrain the Embryonic Cell-Cycle Oscillator?”. PLoS Comput Biol 7 (7): e1002109. doi:10.1371/journal.pcbi.1002109.

Teng, Shu-Wen, Jessica Schaffer, Kimberly Tu, Pankaj Mehta, Wenyun Lu, Ong, Bonnie Bassler, and Ned Wingreen. (2011) 2011. “Active Regulation of Receptor Ratios Controls Integration of Quorum-Sensing Signals in Vibrio Harveyi.”. Mol Syst Biol 7: 491. doi:10.1038/msb.2011.30.

Borenstein, David Bruce, Yigal Meir, Joshua Shaevitz, and Ned Wingreen. 2013. “Non-Local Interaction via Diffusible Resource Prevents Coexistence of Cooperators and Cheaters in a Lattice Model.”. PLoS One 8 (5): e63304. doi:10.1371/journal.pone.0063304.

Taillefumier, Thibaud, and Ned Wingreen. (2015) 2015. “Optimal Census by Quorum Sensing.”. PLoS Comput Biol 11 (5): e1004238. doi:10.1371/journal.pcbi.1004238.

Wasnik, Vaibhav, Ned Wingreen, and Ranjan Mukhopadhyay. 2015. “Modeling Curvature-Dependent Subcellular Localization of the Small Sporulation Protein SpoVM in Bacillus Subtilis.”. PLoS One 10 (1): e0111971. doi:10.1371/journal.pone.0111971.

Haselwandter, Christoph, and Ned Wingreen. (2014) 2014. “The Role of Membrane-Mediated Interactions in the Assembly and Architecture of Chemoreceptor Lattices.”. PLoS Comput Biol 10 (12): e1003932. doi:10.1371/journal.pcbi.1003932.

Castellana, Michele, Maxwell Wilson, Yifan Xu, Preeti Joshi, Ileana Cristea, Joshua Rabinowitz, Zemer Gitai, and Ned Wingreen. (2014) 2014. “Enzyme Clustering Accelerates Processing of Intermediates through Metabolic Channeling.”. Nat Biotechnol 32 (10): 1011-8. doi:10.1038/nbt.3018.

Borenstein, David Bruce, Peter Ringel, Marek Basler, and Ned Wingreen. (2015) 2015. “Established Microbial Colonies Can Survive Type VI Secretion Assault.”. PLoS Comput Biol 11 (10): e1004520. doi:10.1371/journal.pcbi.1004520.