Miller, Jonathan, Chen Zeng, Ned Wingreen, and Chao Tang. (2002) 2002. “Emergence of Highly Designable Protein-Backbone Conformations in an off-Lattice Model.”. Proteins 47 (4): 506-12. doi:10.1002/prot.10107. Reference Link
Emberly, Eldon, Jonathan Miller, Chen Zeng, Ned Wingreen, and Chao Tang. (2002) 2002. “Identifying Proteins of High Designability via Surface-Exposure Patterns.”. Proteins 47 (3): 295-304. Reference Link
Emberly, Eldon, Ranjan Mukhopadhyay, Chao Tang, and Ned Wingreen. (2004) 2004. “Flexibility of Beta-Sheets: Principal Component Analysis of Database Protein Structures.”. Proteins 55 (1): 91-8. doi:10.1002/prot.10618. Reference Link
Emberly, Eldon, Ranjan Mukhopadhyay, Ned Wingreen, and Chao Tang. (2003) 2003. “Flexibility of Alpha-Helices: Results of a Statistical Analysis of Database Protein Structures.”. J Mol Biol 327 (1): 229-37. Reference Link
Li, Hao, Chao Tang, and Ned Wingreen. (2002) 2002. “Designability of Protein Structures: A Lattice-Model Study Using the Miyazawa-Jernigan Matrix.”. Proteins 49 (3): 403-12. doi:10.1002/prot.10239. Reference Link
Emberly, Eldon, Ned Wingreen, and Chao Tang. (2002) 2002. “Designability of Alpha-Helical Proteins.”. Proc Natl Acad Sci U S A 99 (17): 11163-8. doi:10.1073/pnas.162105999. Reference Link
Zhang, Naigong, Chen Zeng, and Ned Wingreen. (2004) 2004. “Fast Accurate Evaluation of Protein Solvent Exposure.”. Proteins 57 (3): 565-76. doi:10.1002/prot.20191. Reference Link
Vizcarra, Christina, Naigong Zhang, Shannon Marshall, Ned Wingreen, Chen Zeng, and Stephen Mayo. (2008) 2008. “An Improved Pairwise Decomposable Finite-Difference Poisson-Boltzmann Method for Computational Protein Design.”. J Comput Chem 29 (7): 1153-62. doi:10.1002/jcc.20878. Reference Link
Mehta, Pankaj, Sidhartha Goyal, and Ned Wingreen. 2008. “A Quantitative Comparison of SRNA-Based and Protein-Based Gene Regulation.”. Mol Syst Biol 4: 221. doi:10.1038/msb.2008.58. Reference Link