Molecular Sequence Data

Mukhopadhyay, Ranjan, Eldon Emberly, Chao Tang, and Ned Wingreen. (2003) 2003. “Statistical Mechanics of RNA Folding: Importance of Alphabet Size.”. Phys Rev E Stat Nonlin Soft Matter Phys 68 (4 Pt 1): 041904. doi:10.1103/PhysRevE.68.041904.

Reference Link
Lenz, Derrick, Kenny Mok, Brendan Lilley, Rahul Kulkarni, Ned Wingreen, and Bonnie Bassler. (2004) 2004. “The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio Harveyi and Vibrio Cholerae.”. Cell 118 (1): 69-82. doi:10.1016/j.cell.2004.06.009.

Reference Link
Huang, Kerwyn Casey, Ranjan Mukhopadhyay, and Ned Wingreen. (2006) 2006. “A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles.”. PLoS Comput Biol 2 (11): e151. doi:10.1371/journal.pcbi.0020151.

Reference Link
Swem, Lee, Danielle Swem, Ned Wingreen, and Bonnie Bassler. (2008) 2008. “Deducing Receptor Signaling Parameters from in Vivo Analysis: LuxN AI-1 Quorum Sensing in Vibrio Harveyi.”. Cell 134 (3): 461-73. doi:10.1016/j.cell.2008.06.023.

Reference Link
Guberman, Jonathan, Allison Fay, Jonathan Dworkin, Ned Wingreen, and Zemer Gitai. (2008) 2008. “PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution.”. PLoS Comput Biol 4 (11): e1000233. doi:10.1371/journal.pcbi.1000233.

Reference Link
Tu, Kimberly, Tao Long, Sine Svenningsen, Ned Wingreen, and Bonnie Bassler. (2010) 2010. “Negative Feedback Loops Involving Small Regulatory RNAs Precisely Control the Vibrio Harveyi Quorum-Sensing Response.”. Mol Cell 37 (4): 567-79. doi:10.1016/j.molcel.2010.01.022.

Reference Link
Feng, Lihui, Steven Rutherford, Kai Papenfort, John Bagert, Julia Kessel, David Tirrell, Ned Wingreen, and Bonnie Bassler. (2015) 2015. “A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics.”. Cell 160 (1-2): 228-40. doi:10.1016/j.cell.2014.11.051.

Reference Link