Huang, Kerwyn Casey, Yigal Meir, and Ned Wingreen. (2003) 2003. “Dynamic Structures in Escherichia Coli: Spontaneous Formation of MinE Rings and MinD Polar Zones.”. Proc Natl Acad Sci U S A 100 (22): 12724-8. doi:10.1073/pnas.2135445100.

Keymer, Juan, Robert Endres, Monica Skoge, Yigal Meir, and Ned Wingreen. (2006) 2006. “Chemosensing in Escherichia Coli: Two Regimes of Two-State Receptors.”. Proc Natl Acad Sci U S A 103 (6): 1786-91. doi:10.1073/pnas.0507438103.

Kulkarni, Rahul, Kerwyn Casey Huang, Morten Kloster, and Ned Wingreen. (2004) 2004. “Pattern Formation Within Escherichia Coli: Diffusion, Membrane Attachment, and Self-Interaction of MinD Molecules.”. Phys Rev Lett 93 (22): 228103. doi:10.1103/PhysRevLett.93.228103.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, and Ned Wingreen. (2006) 2006. “A Curvature-Mediated Mechanism for Localization of Lipids to Bacterial Poles.”. PLoS Comput Biol 2 (11): e151. doi:10.1371/journal.pcbi.0020151.

Ureta, Alejandro, Robert Endres, Ned Wingreen, and Thomas Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment.”. J Bacteriol 189 (2): 446-54. doi:10.1128/JB.01103-06.

Skoge, Monica, Robert Endres, and Ned Wingreen. (2006) 2006. “Receptor-Receptor Coupling in Bacterial Chemotaxis: Evidence for Strongly Coupled Clusters.”. Biophys J 90 (12): 4317-26. doi:10.1529/biophysj.105.079905.

Sourjik, Victor, and Ned Wingreen. (2007) 2007. “Turning to the Cold.”. Nat Cell Biol 9 (9): 1029-31. doi:10.1038/ncb0907-1029.

Endres, Robert, Joseph Falke, and Ned Wingreen. (2007) 2007. “Chemotaxis Receptor Complexes: From Signaling to Assembly.”. PLoS Comput Biol 3 (7): e150. doi:10.1371/journal.pcbi.0030150.

Endres, Robert, Olga Oleksiuk, Clinton Hansen, Yigal Meir, Victor Sourjik, and Ned Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211. doi:10.1038/msb.2008.49.

Mukhopadhyay, Ranjan, Kerwyn Casey Huang, and Ned Wingreen. (2008) 2008. “Lipid Localization in Bacterial Cells through Curvature-Mediated Microphase Separation.”. Biophys J 95 (3): 1034-49. doi:10.1529/biophysj.107.126920.

Hansen, Clinton, Robert Endres, and Ned Wingreen. (2008) 2008. “Chemotaxis in Escherichia Coli: A Molecular Model for Robust Precise Adaptation.”. PLoS Comput Biol 4 (1): e1. doi:10.1371/journal.pcbi.0040001.

Yuan, Jie, Christopher Doucette, William Fowler, Xiao-Jiang Feng, Matthew Piazza, Herschel Rabitz, Ned Wingreen, and Joshua Rabinowitz. 2009. “Metabolomics-Driven Quantitative Analysis of Ammonia Assimilation in E. Coli.”. Mol Syst Biol 5: 302. doi:10.1038/msb.2009.60.

Greenfield, Derek, Ann McEvoy, Hari Shroff, Gavin Crooks, Ned Wingreen, Eric Betzig, and Jan Liphardt. (2009) 2009. “Self-Organization of the Escherichia Coli Chemotaxis Network Imaged With Super-Resolution Light Microscopy.”. PLoS Biol 7 (6): e1000137. doi:10.1371/journal.pbio.1000137.

Wang, Hui, Ned Wingreen, and Ranjan Mukhopadhyay. (2008) 2008. “Self-Organized Periodicity of Protein Clusters in Growing Bacteria.”. Phys Rev Lett 101 (21): 218101. doi:10.1103/PhysRevLett.101.218101.

Huang, Kerwyn Casey, Ranjan Mukhopadhyay, Bingni Wen, Zemer Gitai, and Ned Wingreen. (2008) 2008. “Cell Shape and Cell-Wall Organization in Gram-Negative Bacteria.”. Proc Natl Acad Sci U S A 105 (49): 19282-7. doi:10.1073/pnas.0805309105.

Guberman, Jonathan, Allison Fay, Jonathan Dworkin, Ned Wingreen, and Zemer Gitai. (2008) 2008. “PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution.”. PLoS Comput Biol 4 (11): e1000233. doi:10.1371/journal.pcbi.1000233.

Goyal, Sidhartha, Jie Yuan, Thomas Chen, Joshua Rabinowitz, and Ned Wingreen. (2010) 2010. “Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.”. PLoS Comput Biol 6 (6): e1000802. doi:10.1371/journal.pcbi.1000802.

Mora, Thierry, Howard Yu, and Ned Wingreen. (2009) 2009. “Modeling Torque Versus Speed, Shot Noise, and Rotational Diffusion of the Bacterial Flagellar Motor.”. Phys Rev Lett 103 (24): 248102. doi:10.1103/PhysRevLett.103.248102.

Kidd, Philip, and Ned Wingreen. (2010) 2010. “Modeling the Role of Covalent Enzyme Modification in Escherichia Coli Nitrogen Metabolism.”. Phys Biol 7 (1): 016006. doi:10.1088/1478-3975/55/1/016006.

Furchtgott, Leon, Ned Wingreen, and Kerwyn Casey Huang. (2011) 2011. “Mechanisms for Maintaining Cell Shape in Rod-Shaped Gram-Negative Bacteria.”. Mol Microbiol 81 (2): 340-53. doi:10.1111/j.1365-2958.2011.07616.x.

Oleksiuk, Olga, Vladimir Jakovljevic, Nikita Vladimirov, Ricardo Carvalho, Eli Paster, William Ryu, Yigal Meir, Ned Wingreen, Markus Kollmann, and Victor Sourjik. (2011) 2011. “Thermal Robustness of Signaling in Bacterial Chemotaxis.”. Cell 145 (2): 312-21. doi:10.1016/j.cell.2011.03.013.

Meir, Yigal, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, and Ned Wingreen. (2010) 2010. “Precision and Kinetics of Adaptation in Bacterial Chemotaxis.”. Biophys J 99 (9): 2766-74. doi:10.1016/j.bpj.2010.08.051.

Hansen, Clinton, Victor Sourjik, and Ned Wingreen. (2010) 2010. “A Dynamic-Signaling-Team Model for Chemotaxis Receptors in Escherichia Coli.”. Proc Natl Acad Sci U S A 107 (40): 17170-5. doi:10.1073/pnas.1005017107.

Neumann, Silke, Clinton Hansen, Ned Wingreen, and Victor Sourjik. (2010) 2010. “Differences in Signalling by Directly and Indirectly Binding Ligands in Bacterial Chemotaxis.”. EMBO J 29 (20): 3484-95. doi:10.1038/emboj.2010.224.

Daly, Kristopher, Kerwyn Casey Huang, Ned Wingreen, and Ranjan Mukhopadhyay. (2011) 2011. “Mechanics of Membrane Bulging During Cell-Wall Disruption in Gram-Negative Bacteria.”. Phys Rev E Stat Nonlin Soft Matter Phys 83 (4 Pt 1): 041922. doi:10.1103/PhysRevE.83.041922.

Sourjik, Victor, and Ned Wingreen. (2012) 2012. “Responding to Chemical Gradients: Bacterial Chemotaxis.”. Curr Opin Cell Biol 24 (2): 262-8. doi:10.1016/j.ceb.2011.11.008.

Doucette, Christopher, David Schwab, Ned Wingreen, and Joshua Rabinowitz. (2011) 2011. “α-Ketoglutarate Coordinates Carbon and Nitrogen Utilization via Enzyme I Inhibition.”. Nat Chem Biol 7 (12): 894-901. doi:10.1038/nchembio.685.

Teeffelen, Sven, Siyuan Wang, Leon Furchtgott, Kerwyn Casey Huang, Ned Wingreen, Joshua Shaevitz, and Zemer Gitai. (2011) 2011. “The Bacterial Actin MreB Rotates, and Rotation Depends on Cell-Wall Assembly.”. Proc Natl Acad Sci U S A 108 (38): 15822-7. doi:10.1073/pnas.1108999108.

Barry, Rachael, Anne-Florence Bitbol, Alexander Lorestani, Emeric Charles, Chris Habrian, Jesse Hansen, Hsin-Jung Li, et al. (2014) 2014. “Large-Scale Filament Formation Inhibits the Activity of CTP Synthetase.”. Elife 3: e03638. doi:10.7554/eLife.03638.

Neumann, Silke, Nikita Vladimirov, Anna Krembel, Ned Wingreen, and Victor Sourjik. 2014. “Imprecision of Adaptation in Escherichia Coli Chemotaxis.”. PLoS One 9 (1): e84904. doi:10.1371/journal.pone.0084904.

Dwyer, Robert, Dante Ricci, Lucy Colwell, Thomas Silhavy, and Ned Wingreen. (2013) 2013. “Predicting Functionally Informative Mutations in Escherichia Coli BamA Using Evolutionary Covariance Analysis.”. Genetics 195 (2): 443-55. doi:10.1534/genetics.113.155861.

Skoge, Monica, Sahin Naqvi, Yigal Meir, and Ned Wingreen. (2013) 2013. “Chemical Sensing by Nonequilibrium Cooperative Receptors.”. Phys Rev Lett 110 (24): 248102. doi:10.1103/PhysRevLett.110.248102.

Rutherford, Steven, Julie Valastyan, Thibaud Taillefumier, Ned Wingreen, and Bonnie Bassler. (2015) 2015. “Comprehensive Analysis Reveals How Single Nucleotides Contribute to Noncoding RNA Function in Bacterial Quorum Sensing.”. Proc Natl Acad Sci U S A 112 (44). doi:10.1073/pnas.1518958112.

Persat, Alexandre, Carey Nadell, Minyoung Kevin Kim, Francois Ingremeau, Albert Siryaporn, Knut Drescher, Ned Wingreen, Bonnie Bassler, Zemer Gitai, and Howard Stone. (2015) 2015. “The Mechanical World of Bacteria.”. Cell 161 (5): 988-97. doi:10.1016/j.cell.2015.05.005.

Bitbol, Anne-Florence, and Ned Wingreen. (2015) 2015. “Fundamental Constraints on the Abundances of Chemotaxis Proteins.”. Biophys J 108 (5): 1293-305. doi:10.1016/j.bpj.2015.01.024.

Feng, Lihui, Steven Rutherford, Kai Papenfort, John Bagert, Julia Kessel, David Tirrell, Ned Wingreen, and Bonnie Bassler. (2015) 2015. “A Qrr Noncoding RNA Deploys Four Different Regulatory Mechanisms to Optimize Quorum-Sensing Dynamics.”. Cell 160 (1-2): 228-40. doi:10.1016/j.cell.2014.11.051.

Haselwandter, Christoph, and Ned Wingreen. (2014) 2014. “The Role of Membrane-Mediated Interactions in the Assembly and Architecture of Chemoreceptor Lattices.”. PLoS Comput Biol 10 (12): e1003932. doi:10.1371/journal.pcbi.1003932.

Castellana, Michele, Maxwell Wilson, Yifan Xu, Preeti Joshi, Ileana Cristea, Joshua Rabinowitz, Zemer Gitai, and Ned Wingreen. (2014) 2014. “Enzyme Clustering Accelerates Processing of Intermediates through Metabolic Channeling.”. Nat Biotechnol 32 (10): 1011-8. doi:10.1038/nbt.3018.

Borenstein, David Bruce, Peter Ringel, Marek Basler, and Ned Wingreen. (2015) 2015. “Established Microbial Colonies Can Survive Type VI Secretion Assault.”. PLoS Comput Biol 11 (10): e1004520. doi:10.1371/journal.pcbi.1004520.