DNA-Binding Proteins

Endres, Robert, Thomas Schulthess, and Ned Wingreen. (2004) 2004. “Toward an Atomistic Model for Predicting Transcription-Factor Binding Sites.”. Proteins 57 (2): 262-8. doi:10.1002/prot.20199.

Reference Link
Endres, Robert, and Ned Wingreen. (2006) 2006. “Weight Matrices for Protein-DNA Binding Sites from a Single Co-Crystal Structure.”. Phys Rev E Stat Nonlin Soft Matter Phys 73 (6 Pt 1): 061921. doi:10.1103/PhysRevE.73.061921.

Reference Link
Broedersz, Chase, Xindan Wang, Yigal Meir, Joseph Loparo, David Rudner, and Ned Wingreen. (2014) 2014. “Condensation and Localization of the Partitioning Protein ParB on the Bacterial Chromosome.”. Proc Natl Acad Sci U S A 111 (24): 8809-14. doi:10.1073/pnas.1402529111.

Reference Link