Weiner, B. G., A. G. T. Pyo, Y. Meir, and N. S. Wingreen. (2021) 2021. “Motif-Pattern Dependence of Biomolecular Phase Separation Driven by Specific Interactions”. PLoS Comput Biol 17: e1009748.

Zhang, Naigong, Chen Zeng, and Ned Wingreen. (2004) 2004. “Fast Accurate Evaluation of Protein Solvent Exposure.”. Proteins 57 (3): 565-76. doi:10.1002/prot.20191.

Endres, Robert, Thomas Schulthess, and Ned Wingreen. (2004) 2004. “Toward an Atomistic Model for Predicting Transcription-Factor Binding Sites.”. Proteins 57 (2): 262-8. doi:10.1002/prot.20199.

Lenz, Derrick, Kenny Mok, Brendan Lilley, Rahul Kulkarni, Ned Wingreen, and Bonnie Bassler. (2004) 2004. “The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio Harveyi and Vibrio Cholerae.”. Cell 118 (1): 69-82. doi:10.1016/j.cell.2004.06.009.

Vizcarra, Christina, Naigong Zhang, Shannon Marshall, Ned Wingreen, Chen Zeng, and Stephen Mayo. (2008) 2008. “An Improved Pairwise Decomposable Finite-Difference Poisson-Boltzmann Method for Computational Protein Design.”. J Comput Chem 29 (7): 1153-62. doi:10.1002/jcc.20878.

Wyart, Matthieu, David Botstein, and Ned Wingreen. (2010) 2010. “Evaluating Gene Expression Dynamics Using Pairwise RNA FISH Data.”. PLoS Comput Biol 6 (11): e1000979. doi:10.1371/journal.pcbi.1000979.

Dwyer, Robert, Dante Ricci, Lucy Colwell, Thomas Silhavy, and Ned Wingreen. (2013) 2013. “Predicting Functionally Informative Mutations in Escherichia Coli BamA Using Evolutionary Covariance Analysis.”. Genetics 195 (2): 443-55. doi:10.1534/genetics.113.155861.

Haselwandter, Christoph, and Ned Wingreen. (2014) 2014. “The Role of Membrane-Mediated Interactions in the Assembly and Architecture of Chemoreceptor Lattices.”. PLoS Comput Biol 10 (12): e1003932. doi:10.1371/journal.pcbi.1003932.

Castellana, Michele, Maxwell Wilson, Yifan Xu, Preeti Joshi, Ileana Cristea, Joshua Rabinowitz, Zemer Gitai, and Ned Wingreen. (2014) 2014. “Enzyme Clustering Accelerates Processing of Intermediates through Metabolic Channeling.”. Nat Biotechnol 32 (10): 1011-8. doi:10.1038/nbt.3018.