Emberly, Eldon, and Ned Wingreen. (2006) 2006. “Hourglass Model for a Protein-Based Circadian Oscillator.”. Phys Rev Lett 96 (3): 038303. doi:10.1103/PhysRevLett.96.038303.

Huang, Kerwyn Casey, and Ned Wingreen. (2004) 2004. “Min-Protein Oscillations in Round Bacteria.”. Phys Biol 1 (3-4): 229-35. doi:10.1088/1478-3967/1/4/005.

Ureta, Alejandro, Robert Endres, Ned Wingreen, and Thomas Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment.”. J Bacteriol 189 (2): 446-54. doi:10.1128/JB.01103-06.

Endres, Robert, and Ned Wingreen. (2006) 2006. “Precise Adaptation in Bacterial Chemotaxis through ‘assistance neighborhoods’.”. Proc Natl Acad Sci U S A 103 (35): 13040-4. doi:10.1073/pnas.0603101103.

Swem, Lee, Danielle Swem, Ned Wingreen, and Bonnie Bassler. (2008) 2008. “Deducing Receptor Signaling Parameters from in Vivo Analysis: LuxN AI-1 Quorum Sensing in Vibrio Harveyi.”. Cell 134 (3): 461-73. doi:10.1016/j.cell.2008.06.023.

Endres, Robert, Olga Oleksiuk, Clinton Hansen, Yigal Meir, Victor Sourjik, and Ned Wingreen. 2008. “Variable Sizes of Escherichia Coli Chemoreceptor Signaling Teams.”. Mol Syst Biol 4: 211. doi:10.1038/msb.2008.49.

Pompeani, Audra, Joseph Irgon, Michael Berger, Martha Bulyk, Ned Wingreen, and Bonnie Bassler. (2008) 2008. “The Vibrio Harveyi Master Quorum-Sensing Regulator, LuxR, a TetR-Type Protein Is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters.”. Mol Microbiol 70 (1): 76-88. doi:10.1111/j.1365-2958.2008.06389.x.

Hansen, Clinton, Robert Endres, and Ned Wingreen. (2008) 2008. “Chemotaxis in Escherichia Coli: A Molecular Model for Robust Precise Adaptation.”. PLoS Comput Biol 4 (1): e1. doi:10.1371/journal.pcbi.0040001.

Endres, Robert, Joseph Falke, and Ned Wingreen. (2007) 2007. “Chemotaxis Receptor Complexes: From Signaling to Assembly.”. PLoS Comput Biol 3 (7): e150. doi:10.1371/journal.pcbi.0030150.

Mora, Thierry, Howard Yu, Yoshiyuki Sowa, and Ned Wingreen. (2009) 2009. “Steps in the Bacterial Flagellar Motor.”. PLoS Comput Biol 5 (10): e1000540. doi:10.1371/journal.pcbi.1000540.

Greenfield, Derek, Ann McEvoy, Hari Shroff, Gavin Crooks, Ned Wingreen, Eric Betzig, and Jan Liphardt. (2009) 2009. “Self-Organization of the Escherichia Coli Chemotaxis Network Imaged With Super-Resolution Light Microscopy.”. PLoS Biol 7 (6): e1000137. doi:10.1371/journal.pbio.1000137.

Long, Tao, Kimberly Tu, Yufang Wang, Pankaj Mehta, Ong, Bonnie Bassler, and Ned Wingreen. (2009) 2009. “Quantifying the Integration of Quorum-Sensing Signals With Single-Cell Resolution.”. PLoS Biol 7 (3): e68. doi:10.1371/journal.pbio.1000068.

Ng, Wai-Leung, Yunzhou Wei, Lark Perez, Jianping Cong, Tao Long, Matthew Koch, Martin Semmelhack, Ned Wingreen, and Bonnie Bassler. (2010) 2010. “Probing Bacterial Transmembrane Histidine Kinase Receptor-Ligand Interactions With Natural and Synthetic Molecules.”. Proc Natl Acad Sci U S A 107 (12): 5575-80. doi:10.1073/pnas.1001392107.

Tu, Kimberly, Tao Long, Sine Svenningsen, Ned Wingreen, and Bonnie Bassler. (2010) 2010. “Negative Feedback Loops Involving Small Regulatory RNAs Precisely Control the Vibrio Harveyi Quorum-Sensing Response.”. Mol Cell 37 (4): 567-79. doi:10.1016/j.molcel.2010.01.022.

Mora, Thierry, Fan Bai, Yong-Suk Che, Tohru Minamino, Keiichi Namba, and Ned Wingreen. (2011) 2011. “Non-Genetic Individuality in Escherichia Coli Motor Switching.”. Phys Biol 8 (2): 024001. doi:10.1088/1478-3975/8/2/024001.

Meir, Yigal, Vladimir Jakovljevic, Olga Oleksiuk, Victor Sourjik, and Ned Wingreen. (2010) 2010. “Precision and Kinetics of Adaptation in Bacterial Chemotaxis.”. Biophys J 99 (9): 2766-74. doi:10.1016/j.bpj.2010.08.051.

Neumann, Silke, Clinton Hansen, Ned Wingreen, and Victor Sourjik. (2010) 2010. “Differences in Signalling by Directly and Indirectly Binding Ligands in Bacterial Chemotaxis.”. EMBO J 29 (20): 3484-95. doi:10.1038/emboj.2010.224.

Teng, Shu-Wen, Jessica Schaffer, Kimberly Tu, Pankaj Mehta, Wenyun Lu, Ong, Bonnie Bassler, and Ned Wingreen. (2011) 2011. “Active Regulation of Receptor Ratios Controls Integration of Quorum-Sensing Signals in Vibrio Harveyi.”. Mol Syst Biol 7: 491. doi:10.1038/msb.2011.30.

Banigan, Edward, Michael Gelbart, Zemer Gitai, Ned Wingreen, and Andrea Liu. (2011) 2011. “Filament Depolymerization Can Explain Chromosome Pulling During Bacterial Mitosis.”. PLoS Comput Biol 7 (9): e1002145. doi:10.1371/journal.pcbi.1002145.

Wang, Yufang, Kimberly Tu, Ong, Bonnie Bassler, and Ned Wingreen. (2011) 2011. “Protein-Level Fluctuation Correlation at the Microcolony Level and Its Application to the Vibrio Harveyi Quorum-Sensing Circuit.”. Biophys J 100 (12): 3045-53. doi:10.1016/j.bpj.2011.05.006.

Broedersz, Chase, Xindan Wang, Yigal Meir, Joseph Loparo, David Rudner, and Ned Wingreen. (2014) 2014. “Condensation and Localization of the Partitioning Protein ParB on the Bacterial Chromosome.”. Proc Natl Acad Sci U S A 111 (24): 8809-14. doi:10.1073/pnas.1402529111.

Skoge, Monica, Sahin Naqvi, Yigal Meir, and Ned Wingreen. (2013) 2013. “Chemical Sensing by Nonequilibrium Cooperative Receptors.”. Phys Rev Lett 110 (24): 248102. doi:10.1103/PhysRevLett.110.248102.

Wang, Siyuan, and Ned Wingreen. (2013) 2013. “Cell Shape Can Mediate the Spatial Organization of the Bacterial Cytoskeleton.”. Biophys J 104 (3): 541-52. doi:10.1016/j.bpj.2012.12.027.

Bitbol, Anne-Florence, and Ned Wingreen. (2015) 2015. “Fundamental Constraints on the Abundances of Chemotaxis Proteins.”. Biophys J 108 (5): 1293-305. doi:10.1016/j.bpj.2015.01.024.

Wasnik, Vaibhav, Ned Wingreen, and Ranjan Mukhopadhyay. 2015. “Modeling Curvature-Dependent Subcellular Localization of the Small Sporulation Protein SpoVM in Bacillus Subtilis.”. PLoS One 10 (1): e0111971. doi:10.1371/journal.pone.0111971.

Nadell, Carey, Knut Drescher, Ned Wingreen, and Bonnie Bassler. (2015) 2015. “Extracellular Matrix Structure Governs Invasion Resistance in Bacterial Biofilms.”. ISME J 9 (8): 1700-9. doi:10.1038/ismej.2014.246.

Wingreen, Ned, and Kerwyn Casey Huang. 2015. “Physics of Intracellular Organization in Bacteria.”. Annu Rev Microbiol 69: 361-79. doi:10.1146/annurev-micro-091014-104313.