Tareen, A., N. S. Wingreen, and R. Mukhopadhyay. (2020) 2020. “Asymmetry Between Activators and Deactivators in Functional Protein Networks”. Sci Rep 10: 10131.

Kruus, Erik, Peter Thumfort, Chao Tang, and Ned Wingreen. 2005. “Gibbs Sampling and Helix-Cap Motifs.”. Nucleic Acids Res 33 (16): 5343-53. doi:10.1093/nar/gki842.

Endres, Robert, Thomas Schulthess, and Ned Wingreen. (2004) 2004. “Toward an Atomistic Model for Predicting Transcription-Factor Binding Sites.”. Proteins 57 (2): 262-8. doi:10.1002/prot.20199.

Goyal, Sidhartha, and Ned Wingreen. (2007) 2007. “Growth-Induced Instability in Metabolic Networks.”. Phys Rev Lett 98 (13): 138105. doi:10.1103/PhysRevLett.98.138105.

Endres, Robert, and Ned Wingreen. (2006) 2006. “Weight Matrices for Protein-DNA Binding Sites from a Single Co-Crystal Structure.”. Phys Rev E Stat Nonlin Soft Matter Phys 73 (6 Pt 1): 061921. doi:10.1103/PhysRevE.73.061921.

Guberman, Jonathan, Allison Fay, Jonathan Dworkin, Ned Wingreen, and Zemer Gitai. (2008) 2008. “PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution.”. PLoS Comput Biol 4 (11): e1000233. doi:10.1371/journal.pcbi.1000233.

Mora, Thierry, Howard Yu, Yoshiyuki Sowa, and Ned Wingreen. (2009) 2009. “Steps in the Bacterial Flagellar Motor.”. PLoS Comput Biol 5 (10): e1000540. doi:10.1371/journal.pcbi.1000540.

Wang, Hui, Ned Wingreen, and Ranjan Mukhopadhyay. (2008) 2008. “Self-Organized Periodicity of Protein Clusters in Growing Bacteria.”. Phys Rev Lett 101 (21): 218101. doi:10.1103/PhysRevLett.101.218101.

Endres, Robert, and Ned Wingreen. (2009) 2009. “Maximum Likelihood and the Single Receptor.”. Phys Rev Lett 103 (15): 158101. doi:10.1103/PhysRevLett.103.158101.

Wyart, Matthieu, David Botstein, and Ned Wingreen. (2010) 2010. “Evaluating Gene Expression Dynamics Using Pairwise RNA FISH Data.”. PLoS Comput Biol 6 (11): e1000979. doi:10.1371/journal.pcbi.1000979.

Mora, Thierry, and Ned Wingreen. (2010) 2010. “Limits of Sensing Temporal Concentration Changes by Single Cells.”. Phys Rev Lett 104 (24): 248101. doi:10.1103/PhysRevLett.104.248101.

Hansen, Clinton, Victor Sourjik, and Ned Wingreen. (2010) 2010. “A Dynamic-Signaling-Team Model for Chemotaxis Receptors in Escherichia Coli.”. Proc Natl Acad Sci U S A 107 (40): 17170-5. doi:10.1073/pnas.1005017107.

Cooper, Robert, Ned Wingreen, and Edward Cox. 2012. “An Excitable Cortex and Memory Model Successfully Predicts New Pseudopod Dynamics.”. PLoS One 7 (3): e33528. doi:10.1371/journal.pone.0033528.

Broedersz, Chase, Xindan Wang, Yigal Meir, Joseph Loparo, David Rudner, and Ned Wingreen. (2014) 2014. “Condensation and Localization of the Partitioning Protein ParB on the Bacterial Chromosome.”. Proc Natl Acad Sci U S A 111 (24): 8809-14. doi:10.1073/pnas.1402529111.