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Saad-Roy, C. M., N. S. Wingreen, S. A. Levin, and B.T. Grenfell. (2020) 2020. “Dynamics in a Simple Evolutionary-Epidemiological Model for the Evolution of an Initial Asymptomatic Infection Stage”. Proc Natl Acad Sci U S A 117: 11541-50. Reference Link
Jemielita, M., N. S. Wingreen, and B. L. Bassler. (2018) 2018. “Quorum Sensing Controls Vibrio Cholerae Multicellular Aggregate Formation”. Elife 7. Reference Link
Zhang, Y., D. S. W. Lee, Y. Meir, C.P. Brangwynne, and N. S. Wingreen. (2021) 2021. “Mechanical Frustration of Phase Separation in the Cell Nucleus by Chromatin”. Phys Rev Lett 126: 258102. Reference Link
Saad-Roy, C. M., N. Arinaminpathy, N. S. Wingreen, S. A. Levin, J. M. Akey, and B.T. Grenfell. (2020) 2020. “Implications of Localized Charge for Human Influenza A H1N1 Hemagglutinin Evolution: Insights from Deep Mutational Scans”. PLoS Comput Biol 16: e1007892. Reference Link
Beroz, F., J. Yan, B. Sabass, H. A. Stone, B. L. Bassler, N. S. Wingreen, and Y. Meir. (2018) 2018. “Verticalization of Bacterial Biofilms”. Nat Phys 14: 954-60. Reference Link
Weiner, B. G., A. G. T. Pyo, Y. Meir, and N. S. Wingreen. (2021) 2021. “Motif-Pattern Dependence of Biomolecular Phase Separation Driven by Specific Interactions”. PLoS Comput Biol 17: e1009748. Reference Link
Qin, B., C. Fei, A. A. Bridges, A. A. Mashruwala, H. A. Stone, N. S. Wingreen, and B. L. Bassler. (2020) 2020. “Cell Position Fates and Collective Fountain Flow in Bacterial Biofilms Revealed by Light-Sheet Microscopy”. Science 369: 71-77. Reference Link
Ali, M. Z., N. S. Wingreen, and R. Mukhopadhyay. (2018) 2018. “Hidden Long Evolutionary Memory in a Model Biochemical Network”. Phys Rev E 97: 040401. Reference Link
Saad-Roy, C. M., B.T. Grenfell, S. A. Levin, P. Driessche, and N. S. Wingreen. (2021) 2021. “Evolution of an Asymptomatic First Stage of Infection in a Heterogeneous Population”. J R Soc Interface 18: 20210175. Reference Link
Grimm, J., H. Shi, W. Wang, A. M. Mitchell, N. S. Wingreen, K. C. Huang, and T.J. Silhavy. (2020) 2020. “The Inner Membrane Protein YhdP Modulates the Rate of Anterograde Phospholipid Flow in Escherichia Coli”. Proc Natl Acad Sci U S A 117: 26907-14. Reference Link
Yan, J., C. D. Nadell, H. A. Stone, N. S. Wingreen, and B. L. Bassler. (2017) 2017. “Extracellular-Matrix-Mediated Osmotic Pressure Drives Vibrio Cholerae Biofilm Expansion and Cheater Exclusion”. Nat Commun 8: 327. Reference Link
Saad-Roy, C. M., B.T. Grenfell, S. A. Levin, L. Pellis, H. B. Stage, P. Driessche, and N. S. Wingreen. (2021) 2021. “Superinfection and the Evolution of an Initial Asymptomatic Stage”. R Soc Open Sci 8: 202212. Reference Link
Fei, C., S. Mao, J. Yan, R. Alert, H. A. Stone, B. L. Bassler, N. S. Wingreen, and A. Košmrlj. (2020) 2020. “Nonuniform Growth and Surface Friction Determine Bacterial Biofilm Morphology on Soft Substrates”. Proc Natl Acad Sci U S A 117: 7622-32. Reference Link
Paulick, A., V. Jakovljevic, S. Zhang, M. Erickstad, A. Groisman, Y. Meir, W. S. Ryu, N. S. Wingreen, and V. Sourjik. (2017) 2017. “Mechanism of Bidirectional Thermotaxis in Escherichia Coli”. Elife 6. Reference Link
Qin, B., C. Fei, B. Wang, H. A. Stone, N. S. Wingreen, and B. L. Bassler. (2021) 2021. “Hierarchical Transitions and Fractal Wrinkling Drive Bacterial Pellicle Morphogenesis”. Proc Natl Acad Sci U S A 118. Reference Link
Erez, A., J. G. Lopez, B. G. Weiner, Y. Meir, and N. S. Wingreen. (2020) 2020. “Nutrient Levels and Trade-Offs Control Diversity in a Serial Dilution Ecosystem”. Elife 9. Reference Link
Freeman Rosenzweig, E. S., B. Xu, L. Kuhn Cuellar, A. Martinez-Sanchez, M. Schaffer, M. Strauss, H. N. Cartwright, et al. (2017) 2017. “The Eukaryotic CO(2)-Concentrating Organelle Is Liquid-Like and Exhibits Dynamic Reorganization”. Cell 171: 148-162.e19. Reference Link
Pareek, V., Z. Sha, J. He, N. S. Wingreen, and S. J. Benkovic. (2021) 2021. “Metabolic Channeling: Predictions, Deductions, and Evidence”. Mol Cell 81: 3775-85. Reference Link
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Beroz, F., L. M. Jawerth, S. Münster, D. A. Weitz, C. P. Broedersz, and N. S. Wingreen. (2017) 2017. “Physical Limits to Biomechanical Sensing in Disordered Fibre Networks”. Nat Commun 8: 16096. Reference Link
Narla, A. V., D. B. Borenstein, and N. S. Wingreen. (2021) 2021. “A Biophysical Limit for Quorum Sensing in Biofilms”. Proc Natl Acad Sci U S A 118. Reference Link
Yan, J., C. Fei, S. Mao, A. Moreau, N. S. Wingreen, A. Košmrlj, H. A. Stone, and B. L. Bassler. (2019) 2019. “Mechanical Instability and Interfacial Energy Drive Biofilm Morphogenesis”. Elife 8. Reference Link
Miangolarra, A. M., S. H. Li, J. F. Joanny, N. S. Wingreen, and M. Castellana. (2021) 2021. “Steric Interactions and Out-of-Equilibrium Processes Control the Internal Organization of Bacteria”. Proc Natl Acad Sci U S A 118. Reference Link
Weiner, B. G., A. Posfai, and N. S. Wingreen. (2019) 2019. “Spatial Ecology of Territorial Populations”. Proc Natl Acad Sci U S A 116: 17874-79. Reference Link
Lopez, J. G., M. S. Donia, and N. S. Wingreen. (2021) 2021. “Modeling the Ecology of Parasitic Plasmids”. Isme J 15: 2843-52. Reference Link
Rath, S., E. Prangley, J. Donovan, K. Demarest, N. S. Wingreen, Y. Meir, and A. Korennykh. (2019) 2019. “Concerted 2-5A-Mediated MRNA Decay and Transcription Reprogram Protein Synthesis in the DsRNA Response”. Mol Cell 75: 1218-1228.e6. Reference Link
Landajuela, A., M. Braun, C. D. A. Rodrigues, A. Martínez-Calvo, T. Doan, F. Horenkamp, A. Andronicos, et al. (2021) 2021. “FisB Relies on Homo-Oligomerization and Lipid Binding to Catalyze Membrane Fission in Bacteria”. PLoS Biol 19: e3001314. Reference Link
Mayer, A., Y. Zhang, A. S. Perelson, and N. S. Wingreen. (2019) 2019. “Regulation of T Cell Expansion by Antigen Presentation Dynamics”. Proc Natl Acad Sci U S A 116: 5914-19. Reference Link
Koch, M. D., C. Fei, N. S. Wingreen, J. W. Shaevitz, and Z. Gitai. (2021) 2021. “Competitive Binding of Independent Extension and Retraction Motors Explains the Quantitative Dynamics of Type IV Pili”. Proc Natl Acad Sci U S A 118. Reference Link
Chitrakar, A., S. Rath, J. Donovan, K. Demarest, Y. Li, R. R. Sridhar, S. R. Weiss, S. V. Kotenko, N. S. Wingreen, and A. Korennykh. (2019) 2019. “Real-Time 2-5A Kinetics Suggest That Interferons β and λ Evade Global Arrest of Translation by RNase L”. Proc Natl Acad Sci U S A 116: 2103-11. Reference Link
Jemielita, M., A. A. Mashruwala, J. S. Valastyan, N. S. Wingreen, and B. L. Bassler. (2021) 2021. “Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio Cholerae”. MBio 12: e0151821. Reference Link
Ali, M. Z., K. C. Huang, N. S. Wingreen, and R. Mukhopadhyay. (2019) 2019. “Cell Geometry and Leaflet Bilayer Asymmetry Regulate Domain Formation in Plasma Membranes”. Phys Rev E 99: 012401. Reference Link
Erez, A., J. G. Lopez, Y. Meir, and N. S. Wingreen. (2021) 2021. “Enzyme Regulation and Mutation in a Model Serial-Dilution Ecosystem”. Phys Rev E 104: 044412. Reference Link
Tareen, A., N. S. Wingreen, and R. Mukhopadhyay. (2018) 2018. “Modeling Evolution of Crosstalk in Noisy Signal Transduction Networks”. Phys Rev E 97: 020402. Reference Link
Xu, B., G. He, B. G. Weiner, P. Ronceray, Y. Meir, M. C. Jonikas, and N. S. Wingreen. (2020) 2020. “Rigidity Enhances a Magic-Number Effect in Polymer Phase Separation”. Nat Commun 11: 1561. Reference Link
Shin, Y., Y. C. Chang, D. S. W. Lee, J. Berry, D. W. Sanders, P. Ronceray, N. S. Wingreen, M. Haataja, and C.P. Brangwynne. (2018) 2018. “Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome”. Cell 175: 1481-1491.e13. Reference Link
McEnany, J., Y. Meir, and N. S. Wingreen. (2022) 2022. “PiRNAs of Caenorhabditis Elegans Broadly Silence Nonself Sequences through Functionally Random Targeting”. Nucleic Acids Res. Reference Link
Tareen, A., N. S. Wingreen, and R. Mukhopadhyay. (2020) 2020. “Asymmetry Between Activators and Deactivators in Functional Protein Networks”. Sci Rep 10: 10131. Reference Link
Li, S. H., Z. Li, J. O. Park, C. G. King, J. D. Rabinowitz, N. S. Wingreen, and Z. Gitai. (2018) 2018. “Escherichia Coli Translation Strategies Differ across Carbon, Nitrogen and Phosphorus Limitation Conditions”. Nat Microbiol 3: 939-47. Reference Link